Auto Construct Relationships

At the bottom of the Automation tab of the User Options is an option to "Enable Relationship Construction on Alignment".

By default, SA automatically builds relationships to help a user identify the quality of an alignment, verify that an alignment has or has not been altered, and repeat that alignment as needed. Automatic relationship construction is integrated in the following alignment operations:

This option was added to support MP operations that do not want to this automatic action to take place.